; When using this new tolopolgy, make sure you have included the required parameters ; (see http://swisssidechain.ch/MD/gromacs.html) [ D26P ] ; 2-amino-6-oxopimelic acid [ atoms ] N NH1 -0.4700 0 HN H 0.3100 1 CA CT1 0.0700 2 HA HB 0.0900 3 CB CT2 -0.1800 4 HB2 HA 0.0900 5 HB1 HA 0.0900 6 CG CT2 -0.1800 7 HG2 HA 0.0900 8 HG1 HA 0.0900 9 CD CT2 -0.1200 10 HD2 HA 0.0900 11 HD1 HA 0.0900 12 CE CC 0.3600 13 OE O -0.5700 14 CZ CC 0.6700 15 OZ1 OC -0.7600 16 OZ2 OC -0.7600 17 C C 0.5100 18 O O -0.5100 19 [ bonds ] N HN N CA C CA C +N CA HA CB CA O C OZ1 CZ OZ2 CZ CD HD2 CB HB2 CG HG2 CE CZ CD CE OE CE CG CD HD1 CD CB CG HG1 CG HB1 CB [ impropers ] N -C CA HN C CA +N O CE OE CZ CD CZ OZ1 OZ2 CE [ cmap ] -C N CA C +N