; When using this new tolopolgy, make sure you have included the required parameters ; (see http://swisssidechain.ch/MD/gromacs.html) [ DLME ] ; (3r)-3-methyl-l-glutamic acid [ atoms ] N NH1 -0.4700 0 HN H 0.3100 1 CA CT1 0.0700 2 HA HB 0.0900 3 CB CT1 -0.0900 4 HB HA 0.0900 5 CG2 CT3 -0.2700 6 HG21 HA 0.0900 7 HG22 HA 0.0900 8 HG23 HA 0.0900 9 CG1 CT2 -0.2800 10 HG12 HA 0.0900 11 HG11 HA 0.0900 12 CD CC 0.6200 13 OE1 OC -0.7600 14 OE2 OC -0.7600 15 C C 0.5100 16 O O -0.5100 17 [ bonds ] N HN N CA C CA C +N CA HA CB CA O C OE1 CD OE2 CD CG2 HG21 CG2 HG22 HG23 CG2 CB CG2 CG1 HG12 CG1 CB HB CB CD CG1 HG11 CG1 [ impropers ] N -C CA HN C CA +N O CD CG1 OE1 OE2 [ cmap ] -C N CA C +N